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Abstract Internal solitary waves are ubiquitous in coastal regions and marginal seas of the world’s oceans. As the waves shoal shoreward, they lose the energy obtained from ocean tides through globally significant turbulent mixing and dissipation and consequently pump nutrient-rich water to nourish coastal ecosystem. Here we present fine-scale, direct measurements of shoaling internal solitary waves in the South China Sea, which allow for an examination of the physical processes triggering the intensive turbulent mixing in their interior. These are convective breaking in the wave core and the collapse of Kelvin–Helmholtz billows in the wave rear and lower periphery of the core, often occurring simultaneously. The former takes place when the particle velocity exceeds the wave’s propagating velocity. The latter is caused by the instability induced by the strong velocity shear overcoming the stratification. The instabilities generate turbulence levels four orders of magnitude larger than that in the open ocean. 

Large nonlinear internal solitary waves (NLIWs) are known to transit west northwest across the northeastern South China Sea from generation sites around the two‐ridge system in the Luzon Strait. The waves are important because their energy flux and dissipation are several orders of magnitude larger than the surrounding ocean. The wave transit has been well studied up to about the 100 m isobath but observations in shallower water have been scarce. Using oceanographic moorings and an innovative distributed temperature sensing optical cable, the NLIW transformations were observed from 2000 to 2 m on the flanks of Dongsha Atoll (Pratas Reef). Possible outcomes included reflection, refraction around the island, wave breaking, and penetration into shallow water. Upslope penetration depended on incident wave amplitude and direction as well as the local stratification.